Hmm, okay - I'm starting to clutch at straws now..
If the vacuum system is okay ( not sure what a smoke test is and how this works ) and the swirl flap diaphragm is good, then it could be the pipes are the wrong way round.
The swirl rod should pull back the little ball/socket affair on the top right of the engine when it's ticking over, and push it forwards when the engine is revved over 2100rpm - if this is reversed then half the valves are closed when they should be open at higher revs.
As far as I know, and I'm no expert, but the solenoid on the airbox diverts vacuum to the air dosers on the front of the engine, either a cold air feed from the intercooler, or the warmer air from the hot water jacket tucked behind the radiator - I guess if these are the wrong way round then the engine isn't getting the cold intercooled air which would affect performance.
Also, the turbo has no wiring connected ( I don't think ) so I'm not sure what wiring was damaged, but a repair wouldn't have done any harm I suppose....
New fuel filter maybe?
Sadly, I don't know how many things to suggest - it's all time and money which is hard to justify on an older car
